VMD-L Mailing List

From: Justin Gullingsrud (justin_at_ks.uiuc.edu)
Date: Mon May 27 2002 - 10:24:14 CDT

Hi,

In the VMD user's guide there's a section devoted to RMS fits in VMD:
http://www.ks.uiuc.edu/Research/vmd/current/ug/node183.html

Have a look there and let us know if you still have questions.

Cheers,

Justin

On Mon, May 27, 2002 at 04:30:59PM +0200, Vlad Cojocaru wrote:
> Dear VMD users,
> I have two RNA molecules. I would like to fit them using the
> backbone and calculate the rmsd. Can anyone give a hint how can you do
> that with vmd. I would also like to visualize the 2 fitted structures at
> once in order to see how they overlay.
> Thank you very much for any kind of help
> vlad
>
> --
> Vlad Cojocaru
> Max Planck Institut for Biophysical Chemistry
> Deparment: 060
> Am Fassberg 11, 37077 Goettingen, Germany
> tel: ++49-551-201.1389
> e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
>
> 

-- 
Justin Gullingsrud      3111 Beckman Institute
H: (217) 384-4220       I got a million ideas that I ain't even rocked yet...
W: (217) 244-8946       -- Mike D