VMD-L Mailing List

From: ivana adamovic (iadamovic_at_gmail.com)
Date: Mon Feb 27 2006 - 12:19:48 CST

Hello,

I am quite new in using VMD, so I hope that this question was not answered
already, if so, please just point me to where the solution of the problem
was already described.

I would appreciate help on how to obtain electrostatic potential map using
VMD. Can it run PB calculations or we need to read in files form some of the
MD codes?

What is done in APBS Electrostatic part of the Analysis section and in PME ?

Could you explain me a set up for both of these parts?

Thanks a lot,

Ivana Adamovic