VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Apr 10 2015 - 01:55:52 CDT
- Next message: Bharat Sharma: "Re: VMD text mode on MAC OS"
- Previous message: John Stone: "Re: Handful of rendering issues"
- In reply to: Akshata Rudrapatna: "vmd-I: Using the MergeMultiFramesPDB code"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
If I understand you correctly, it seems that you're using a Tcl script
from one of the tutorials? Normally you would run the Tcl script inside
of VMD, e.g. by running a command such as:
source script.tcl
I don't know which specific script you're using nor what it says so
I can't comment on your other questions related to "workdir" etc.
If you provide the URL where you got the script from that might be
helpful.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Sat, Mar 21, 2015 at 03:06:42PM -0700, Akshata Rudrapatna wrote:
> Hello:
> I am currently trying to merge sixty copies of the cowpea mosaic virus
> capsid molecule into one large solvated molecule (like the one provided
> for the satellite tobacco mosaic virus tutorial). I found the
> MergeMultiFramesPDB Tcl file, but I had a few questions regarding it.
> 1) Do I need to download Tcl itself separately from NAMD and then
> implement this code?
> 2) Where do I program the code? Do I just use the TkConsole?
> 3) Where in the code do I need to provide file paths? Is "workdir" a part
> of the code or a reference to providing the file path to the work
> directory?
> I have already tried to use the TkConsole to utilize the code but it has
> not worked and does not yield any new files.
> Any help is greatly appreciated.
> Thanks,
> Akshata RudrapatnaÂ
-- NIH Center for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/
- Next message: Bharat Sharma: "Re: VMD text mode on MAC OS"
- Previous message: John Stone: "Re: Handful of rendering issues"
- In reply to: Akshata Rudrapatna: "vmd-I: Using the MergeMultiFramesPDB code"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]