From: Akshata Rudrapatna (akshata.rudrapatna_at_gmail.com)
Date: Sat Mar 21 2015 - 17:06:42 CDT

Hello:

I am currently trying to merge sixty copies of the cowpea mosaic virus
capsid molecule into one large solvated molecule (like the one provided for
the satellite tobacco mosaic virus tutorial). I found the
MergeMultiFramesPDB Tcl file, but I had a few questions regarding it.
1) Do I need to download Tcl itself separately from NAMD and then implement
this code?
2) Where do I program the code? Do I just use the TkConsole?
3) Where in the code do I need to provide file paths? Is "workdir" a part
of the code or a reference to providing the file path to the work directory?
I have already tried to use the TkConsole to utilize the code but it has
not worked and does not yield any new files.
Any help is greatly appreciated.
Thanks,

Akshata Rudrapatna