VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Dec 28 2005 - 14:42:36 CST

Hi,
  I've just done some testing on this myself and indeed there appear
to be some problems with this plugin on the Windows platform due to
pathnames containing spaces, etc. I'll discuss this with the
authors of the plugin and see if we can get this fixed ASAP.

  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Dec 27, 2005 at 03:51:50PM +0300, Li Anbang wrote:
> Hi, all,
>
> I use VMD 1.84 on MS Windows (login as administrator). I try to
> "Automatic PSF Builder" to build PSF. I tried use several molecule
> (1RCN, 1UBQ). But everytime I got some error message as:
> Error: error deleting "1crn_autopsf-temp.pdb_p1.pdb": permission denied.
>
> Details as following:
> ------------------------------------------------
> error deleting "1crn_autopsf-temp.pdb_P1.pdb": permission denied
> error deleting "1crn_autopsf-temp.pdb_P1.pdb": permission denied
> while executing
> "file delete $segfile"
> (procedure "psfsegments" line 54)
> invoked from within
> "psfsegments"
> (procedure "psfmain" line 42)
> invoked from within
> "psfmain"
> (procedure "::autopsf::runpsfgen" line 35)
> invoked from within
> "::autopsf::runpsfgen"
> invoked from within
> ".autopsf.gobutton invoke"
> ("uplevel" body line 1)
> invoked from within
> "uplevel #0 [list $w invoke]"
> (procedure "tk::ButtonUp" line 24)
> invoked from within
> "tk::ButtonUp .autopsf.gobutton
> "
> (command bound to event)
> ------------------------------------------------
>
> The program stopped and no PSF file generated.
> Do anyone knows how to deal with this? 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078