VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jan 09 2006 - 11:17:12 CST

Hi,
  The latest test version of VMD cured the problem you had below,
but we'll need another update to fix a new problem caused by the
recent PDB web site reorganization. The next test build should
do it for you.

  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Dec 27, 2005 at 03:51:50PM +0300, Li Anbang wrote:
> Hi, all,
>
> I use VMD 1.84 on MS Windows (login as administrator). I try to
> "Automatic PSF Builder" to build PSF. I tried use several molecule
> (1RCN, 1UBQ). But everytime I got some error message as:
> Error: error deleting "1crn_autopsf-temp.pdb_p1.pdb": permission denied.
>
> Details as following:
> ------------------------------------------------
> error deleting "1crn_autopsf-temp.pdb_P1.pdb": permission denied
> error deleting "1crn_autopsf-temp.pdb_P1.pdb": permission denied
> while executing
> "file delete $segfile"
> (procedure "psfsegments" line 54)
> invoked from within
> "psfsegments"
> (procedure "psfmain" line 42)
> invoked from within
> "psfmain"
> (procedure "::autopsf::runpsfgen" line 35)
> invoked from within
> "::autopsf::runpsfgen"
> invoked from within
> ".autopsf.gobutton invoke"
> ("uplevel" body line 1)
> invoked from within
> "uplevel #0 [list $w invoke]"
> (procedure "tk::ButtonUp" line 24)
> invoked from within
> "tk::ButtonUp .autopsf.gobutton
> "
> (command bound to event)
> ------------------------------------------------
>
> The program stopped and no PSF file generated.
> Do anyone knows how to deal with this? 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078