From: snoze pa (
Date: Thu Jan 28 2010 - 11:54:45 CST

Dear vmd Users,
In my SMD simulation, I am trying to calculate number of hbonds break
during SMD simulation. I am using the VMD plugin to calculate number
hbonds separation and the distance between donor and acceptor atoms.
How can I skip the number of hbonds with water molecules using vmd
plugin. Any thought?
Thank you