VMD-L Mailing List
From: Joaim Swedberg (j.swedberg_at_imb.uq.edu.au)
Date: Wed Nov 16 2011 - 17:41:38 CST
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Hi all,
I have spent the last two weeks trying to manually produce topology and Psf
files that will allow for cyclisation between Glu acid side chain and the
N-terminus as well as through Lys and the C-terminus without getting
anything to work. I begin to doubt if it is possible with the current
nomenclature of +N and -C to refer to bonds to the previous and next
residue. Has anybody else tried this with success?
Regards
Joakim Swedberg
Research Officer
Prof David Craik's Group
The Institute for Molecular Bioscience
The University of Queensland
Brisbane QLD 4072
Australia
Phone: +61 (0)413 165 805
Email: j.swedberg_at_imb.uq.edu.au
Web: http://www.imb.uq.edu.au/
- Next message: Tristan Croll: "Re: VMD slows down at multiple windows"
- Previous message: John Stone: "Re: VMD slows down at multiple windows"
- Next in thread: Tristan Croll: "RE: Patching Glu/N-terminus peptide bond type bond"
- Reply: Tristan Croll: "RE: Patching Glu/N-terminus peptide bond type bond"
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