From: Joaim Swedberg (j.swedberg_at_imb.uq.edu.au)
Date: Wed Nov 16 2011 - 17:41:38 CST

Hi all,

I have spent the last two weeks trying to manually produce topology and Psf
files that will allow for cyclisation between Glu acid side chain and the
N-terminus as well as through Lys and the C-terminus without getting
anything to work. I begin to doubt if it is possible with the current
nomenclature of +N and -C to refer to bonds to the previous and next
residue. Has anybody else tried this with success?

 

Regards

 

 

Joakim Swedberg

 

Research Officer

Prof David Craik's Group

The Institute for Molecular Bioscience

The University of Queensland

Brisbane QLD 4072

Australia

 

Phone: +61 (0)413 165 805

Email: j.swedberg_at_imb.uq.edu.au

Web: http://www.imb.uq.edu.au/