VMD-L Mailing List

From: Joel Subach (mjsubach_at_alumni.ncsu.edu)
Date: Tue Mar 28 2023 - 19:30:06 CDT

Hi JC thank you for your kind update:).

I tried this resolution change without success i.e. the page shrunk but I
was then not allowed
to elongate it as you probably were able to do to see the edit bars. I
think this may be a problem
with my Mac and or the software.

Best,
Joel 🚀

On Tue, Mar 28, 2023 at 7:54 PM Gumbart, JC <gumbart_at_physics.gatech.edu>
wrote:

> Ah, sorry, I see what you mean now. I don’t know how to address this
> directly, but on a macbook, you can increase the screen resolution. When I
> do that, I see it.
>
> Best,
> JC
>
> On Mar 28, 2023, at 7:41 PM, Joel Subach <mjsubach_at_alumni.ncsu.edu> wrote:
>
> Hello JC thank you for your kind update:).
>
> If this is true from the screenshot you attached where and or how would I
> edit the entries as the
> tutorial Step 6 indicates below:
>
> 6 Update the dihedral parameters in the refine section as given in Table 2.
>
> ?
>
> Thanks:)
> Joel 🚀
>
>
> On Tue, Mar 28, 2023 at 7:33 PM Gumbart, JC <gumbart_at_physics.gatech.edu>
> wrote:
>
>> You’re not missing any boxes. I attach an image of what I see.
>>
>> As to your other error, I have no idea. I don’t think trying to put any
>> file in that box should through an error. Maybe it’s a weird Mac M1 issue,
>> but I don’t think anyone else has seen it.
>>
>> Best,
>> JC
>>
>> <Screen Shot 2023-03-28 at 7.28.55 PM.png>
>>
>> On Mar 28, 2023, at 7:28 PM, Joel Subach <mjsubach_at_alumni.ncsu.edu>
>> wrote:
>>
>> Hello JC thank you for your kind update:).
>>
>> The EDIT ENTRY is only half visible and the boxes beneath for the edits
>> are completely hidden, accordingly I think this is
>> a software issue unless you or someone else knows of a way for me to
>> elongate this section.
>>
>> Also I tried instead using the other VMD version VMD 1.9.4a57-arm64-Rev12
>> but the Opt Torsion Tab, NAMD Binary Input
>> will not allow me to input namd2 Unix Executable File, when I try I
>> receive the error:
>>
>> THE OPEN FILE OPERATION FAILED
>> The Open File Operation Failed to Connect to the Open and Save Panel
>> Service (see screenshot attached)
>> (I will make a seperate post for this problem.)
>>
>> Thanks if you know:)
>> Joel 🚀
>>
>>
>>
>> On Tue, Mar 28, 2023 at 7:06 PM Gumbart, JC <gumbart_at_physics.gatech.edu>
>> wrote:
>>
>>> Oh, sorry, I see the screenshot you sent earlier. You aren’t missing
>>> anything. The “edit entry” is just a little text but no entry boxes, just
>>> the kmax, etc.
>>>
>>> Best,
>>> JC
>>>
>>> On Mar 28, 2023, at 7:04 PM, Gumbart, JC <gumbart_at_physics.gatech.edu>
>>> wrote:
>>>
>>> Hi Joel,
>>>
>>> Can you close other parts of the tab? I don’t think your resolution
>>> needs to be that high to show *just* the refine part, assuming all others
>>> are closed.
>>>
>>> Best,
>>> JC
>>>
>>> On Mar 27, 2023, at 8:25 AM, Joel Subach <mjsubach_at_alumni.ncsu.edu>
>>> wrote:
>>>
>>> ...and my VMD Version being used towards this problem is: VMD
>>> 1.9.4a57-x86_64-Rev12
>>> accordingly should I try a different DMV Version to get passed this, I
>>> believe, software error?
>>>
>>> Thanks:)
>>> Joel 🚀
>>>
>>> On Sat, Mar 25, 2023 at 5:14 PM Joel Subach <mjsubach_at_alumni.ncsu.edu>
>>> wrote:
>>>
>>>> Hi I am on the ffTK Opt Torsions Tab, Refine Section and need to amend
>>>> my values, however, the Edit Entry Section is not visible. Is there a
>>>> special
>>>> way that I may elongate this section to make my amendments?
>>>> (See-screenshot).
>>>>
>>>> Thanks if you know:),
>>>> Joel 🚀
>>>>
>>>
>>>
>>>
>>
>