VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Jun 22 2012 - 12:13:06 CDT

Balaji,
  Run ::porcupineplot::Help and it should print out a description of
the parameters you have to provide to Traj and the other routines.

Cheers,
  John Stone
  

On Fri, Jun 22, 2012 at 06:04:04PM +0100, Ban Arn wrote:
> Dear John
> Calling the commands "procupineplot::Traj" shows error as invalid command
> Could you please help me what i'm missing in the command .
> Many Thanks
> Balaji
>
> On Fri, Jun 22, 2012 at 5:59 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
>
> Sourcing or playing the script won't do anything initially.
> You have to call the routines that the script contains, as pointed
> out in Axel's previous reply on this:
> http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/17155.html
>
> Cheers,
> John
> On Fri, Jun 22, 2012 at 05:54:15PM +0100, Ban Arn wrote:
> > Dear John
> > I find the script in the link
> > http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/17154.html
> > Balaji
> >
> > On Fri, Jun 22, 2012 at 5:53 PM, Ban Arn <ban.arn_at_gmail.com> wrote:
> >
> > Dear John
> > Kindly find the attachment for the script i'm using.
> > Its slightly different from the one you send.
> > However, running the script by commands
> > source script.tcl or play script.tcl doesn't give me any outputs.
> > Kindly advice
> > Many Thanks
> > Balaji
> > On Fri, Jun 22, 2012 at 5:44 PM, John Stone <johns_at_ks.uiuc.edu>
> wrote:
> >
> > Hi,
> > I assume you're using this script? Where did you get the copy
> you're
> > using, is it exactly this one?:
> >
> http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/att-15365/PorcupinePlot.tcl
> >
> > Cheers,
> > John Stone
> > vmd_at_ks.uiuc.edu
> > On Fri, Jun 22, 2012 at 04:01:38PM +0100, Ban Arn wrote:
> > > Dear VMD users
> > > I'm using procupine_plot.tcl script to visualise the
> individual
> > motions of
> > > PCA.
> > > I run the script using command "play procupine_plot.tcl.
> > > Running the above command shows that
> > > "cant create procedure "ProcupinePlot ::set ColorScale":
> unkown
> > namespace
> > > cant create procedure "ProcupinePlot ::Porc
> ColorScaleBar":
> > unkown
> > > namespace
> > > cant create procedure "ProcupinePlot
> ::PorcDrawColoredArrow":
> > unkown
> > > namespace"
> > > Kindly advice how to use the script.
> > > Many Thanks
> > > Balaji
> >
> > --
> > NIH Resource for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> > http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078