VMD-L Mailing List

From: Ban Arn (ban.arn_at_gmail.com)
Date: Fri Jun 22 2012 - 12:30:56 CDT

Dear John

Running the command " Run ::porcupineplot::Help" shows error as invalid
command.

Balaji

On Fri, Jun 22, 2012 at 6:13 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

>
> Balaji,
> Run ::porcupineplot::Help and it should print out a description of
> the parameters you have to provide to Traj and the other routines.
>
> Cheers,
> John Stone
>
>
> On Fri, Jun 22, 2012 at 06:04:04PM +0100, Ban Arn wrote:
> > Dear John
> > Calling the commands "procupineplot::Traj" shows error as invalid
> command
> > Could you please help me what i'm missing in the command .
> > Many Thanks
> > Balaji
> >
> > On Fri, Jun 22, 2012 at 5:59 PM, John Stone <johns_at_ks.uiuc.edu>
> wrote:
> >
> > Sourcing or playing the script won't do anything initially.
> > You have to call the routines that the script contains, as pointed
> > out in Axel's previous reply on this:
> > http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/17155.html
> >
> > Cheers,
> > John
> > On Fri, Jun 22, 2012 at 05:54:15PM +0100, Ban Arn wrote:
> > > Dear John
> > > I find the script in the link
> > >
> http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/17154.html
> > > Balaji
> > >
> > > On Fri, Jun 22, 2012 at 5:53 PM, Ban Arn <ban.arn_at_gmail.com>
> wrote:
> > >
> > > Dear John
> > > Kindly find the attachment for the script i'm using.
> > > Its slightly different from the one you send.
> > > However, running the script by commands
> > > source script.tcl or play script.tcl doesn't give me any
> outputs.
> > > Kindly advice
> > > Many Thanks
> > > Balaji
> > > On Fri, Jun 22, 2012 at 5:44 PM, John Stone <
> johns_at_ks.uiuc.edu>
> > wrote:
> > >
> > > Hi,
> > > I assume you're using this script? Where did you get the
> copy
> > you're
> > > using, is it exactly this one?:
> > >
> >
> http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/att-15365/PorcupinePlot.tcl
> > >
> > > Cheers,
> > > John Stone
> > > vmd_at_ks.uiuc.edu
> > > On Fri, Jun 22, 2012 at 04:01:38PM +0100, Ban Arn wrote:
> > > > Dear VMD users
> > > > I'm using procupine_plot.tcl script to visualise the
> > individual
> > > motions of
> > > > PCA.
> > > > I run the script using command "play
> procupine_plot.tcl.
> > > > Running the above command shows that
> > > > "cant create procedure "ProcupinePlot ::set
> ColorScale":
> > unkown
> > > namespace
> > > > cant create procedure "ProcupinePlot ::Porc
> > ColorScaleBar":
> > > unkown
> > > > namespace
> > > > cant create procedure "ProcupinePlot
> > ::PorcDrawColoredArrow":
> > > unkown
> > > > namespace"
> > > > Kindly advice how to use the script.
> > > > Many Thanks
> > > > Balaji
> > >
> > > --
> > > NIH Resource for Macromolecular Modeling and Bioinformatics
> > > Beckman Institute for Advanced Science and Technology
> > > University of Illinois, 405 N. Mathews Ave, Urbana, IL
> 61801
> > > http://www.ks.uiuc.edu/~johns/ Phone:
> 217-244-3349
> > > http://www.ks.uiuc.edu/Research/vmd/ Fax:
> 217-244-6078
> >
> > --
> > NIH Resource for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> > http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>