VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Mon Nov 05 2007 - 15:02:36 CST

On second thought, this appears to happen in even the latest builds.
Looks like there's an issue with having an empty bond list; I'll have to
track down exactly what. Thanks for pointing this out.
Best,
Peter

Peter Freddolino wrote:
> Hi Francois,
> what version of VMD are you using? There had been a memory corruption
> problem in this plugin that was fixed fairly recently, and only
> manifested on some architectures (I believe including linux64).
>
> Best,
> Peter
>
> FyD wrote:
>
>> Dear All,
>>
>> I load the following Tripos mol2 file in VMD.
>> This file is constituted of a unique atom:
>>
>> @<TRIPOS>MOLECULE
>> METH
>> 1 0 1 0 1
>> SMALL
>> USER_CHARGES
>> @<TRIPOS>ATOM
>> 1 H14 0.131341 1.070393 -0.105211 H 1 METH
>> 0.0414 ****
>> @<TRIPOS>BOND
>> @<TRIPOS>SUBSTRUCTURE
>>
>> Under linux 32bits, this file can be read under VMD-opengl.
>> Under linux 64bits, this file can be read under VMD-64bits, VMD crashes.
>>
>> Any idea why ?
>>
>> Thanks, regards, Francois
>>
>>
>>