VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Dec 16 2003 - 21:02:57 CST

Josh,
  Can you send us a copy of the Charmm crd file that you're having
problems loading with VMD? Sorry for the delayed reply, I've been
sick for several days now, finally feeling good enough to deal with
email..

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Dec 12, 2003 at 03:52:22PM -0500, Josh Ward wrote:
> I've just installed 1.8.2 and can't get the COR plugin to work reading
> CHARMM CRD files. I tried reading the file alone, as with the pdb plugin.
> I also tried reading the PSF and then the CRD. Neither put my molecule on
> the screen.
>
> When reading CRD alone, output was:
>
> Info) Using plugin cor for coordinates from file /Users/wardjm/3.c.min.crd
> Error reading coordinates.
> Info) Finished with coordinate file /Users/wardjm/3.c.min.crd.
> Info) Analyzing structure ...
> Info) Atoms: 1723
> Info) Residues: 1723
> Info) Waters: 0
> Info) Segments: 2
> Info) Fragments: 1723 Protein: 0 Nucleic: 0
>
> After loading the PSF:
>
> Info) Using plugin psf for structure file /Users/wardjm/3.c.psf
> Info) Analyzing structure ...
> Info) Atoms: 1723
> Info) Residues: 106
> Info) Waters: 0
> Info) Segments: 2
> Info) Fragments: 2 Protein: 2 Nucleic: 0
> Info) Using plugin cor for coordinates from file /Users/wardjm/3.c.min.crd
> Error reading coordinates.
>
> I'm out of ideas on how to use the plugin and/or install it properly.
> Tested it on both Linux and Mac OSX.
>
> Please help,
>
> Josh Ward
> Graduate Student
> Purdue University 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078