VMD-L Mailing List

From: João Ribeiro (jribeiro_at_ks.uiuc.edu)
Date: Thu Jul 05 2018 - 13:01:24 CDT

Did you perform the step 8?

"8 Using a text editor open the file KCSA.pdb, search for END and delete
the lines: END CRYST1 155.330 155.330 76.270 90.00 90.00 90.00 P 1 1 that
are between segments A and B, B and C, as well as those found between
segments C and D."

Best

João

On Thu, Jul 5, 2018 at 10:25 AM McGuire, Kelly <mcg05004_at_byui.edu> wrote:

> I am going through the membrane/protein tutorial, and after I get through
> the Building The Tetramer step (for my protein 5TTC, not KcsA), I open the
> structure in VMD and VMD thinks the 4 monomers are 4 different frames
> instead of 1 tetrameric structure. What would cause VMD to open my
> concatenated pdb file with the monomers as frames instead of a single
> structure?
>
>
> *Kelly L. McGuire*
>
> *PhD Scholar*
>
> *Department of Physiology and Developmental Biology*
>
> *Brigham Young University*
>
> *LSB 3050*
>
> *Provo, UT 84602*
>
>
> 

-- 
……………………………………………………...
João Vieira Ribeiro
Theoretical and Computational Biophysics Group
Beckman Institute, University of Illinois
http://www.ks.uiuc.edu/~jribeiro/
jribeiro_at_ks.uiuc.edu
+1 (217) 3005851