VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Aug 11 2011 - 16:36:50 CDT

Hi,
  When running your analysis on the supercomputer, did you make
sure to use "waitfor all" when loading your files?

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Aug 11, 2011 at 04:49:08PM -0400, Sara baretller wrote:
> Hi all,
>
> i have a question about loading vmd to super computer , so my script works
> fine in the local computer and i get data
> but when i run th script in super computer i get simallar data to what i
> got in local computer but after a certain number of frame, the data is
> the same it looks like it does not load after the a certain frame , i
> tried loading from the that specific frames and still got same frozen data
> ,
>
> does any body have any idea what is the problem thank you
>
> 9.64 32.33 20.49 32.83 10.43 4.46 28.78
> 10.20 34.93 20.26 32.89 11.84 5.97 30.08
> 9.96 35.54 19.75 32.66 11.95 6.48 29.27
> 10.96 37.26 19.74 35.12 13.10 10.53 25.21
> 12.39 40.20 22.51 35.56 13.37 9.37 29.11
> 10.58 35.98 19.18 32.92 9.49 7.77 29.00
> 11.87 37.69 19.44 32.70 10.60 7.94 28.34
> 11.86 38.42 18.62 32.74 9.37 8.53 28.51
> 12.30 36.45 18.08 34.30 10.28 8.76 29.13
>
> after here data frozen which does not happen when doing analysis in local
> computer
>
> 12.30 36.45 18.08 34.30 10.28 8.76 29.13
> 12.30 36.45 18.08 34.30 10.28 8.76 29.13
> 12.30 36.45 18.08 34.30 10.28 8.76 29.13
> 12.30 36.45 18.08 34.30 10.28 8.76 29.13 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078