VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Dec 02 2015 - 15:19:11 CST

Hi,
  You don't mention your purpose, but if your purpose is visualization
related, try using the "dynamic bonds" representation. If you're dealing
with some kind of reaction simulation, perhaps you can say more about what
you're trying to do here?

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Dec 02, 2015 at 10:42:30AM +0530, Karteek Kumar wrote:
> Hi Users,
> Is there any way of determining the connectivity information on the fly.
> Instead of assuming the connectivity of first frame.A
> I tried with '" topo guessbonds and topo retypebonds". But how to execute
> for all the frames.
> Thanks in advance
> Karteek 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/