VMD-L Mailing List
From: Giovanni Bellesia (gbellesia_at_chem.ucsb.edu)
Date: Mon May 12 2008 - 10:58:45 CDT
- Next message: Andrew Huang: "Bond lengths from PDB and PSF"
- Previous message: OZGE ENGIN: "coloring according to charge of residues"
- In reply to: OZGE ENGIN: "coloring according to charge of residues"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
VMD main window:
- click on Graphics
- click on Colors
- Categories -> Restype
In the "Names" window you will see the selection keywords for the
different AA types.
You can assign the color you like to each one of them
Hope this helps
Giovanni
> Hi all,
>
> This is rather a straightforward question; but I could not find any direct answer to it on the internet. I want to color my protein according to the charge of residues. For instance, hydrophobic residues are in X color, acidic residues are in Y color, and basic residues are in Z color.
>
> Could anyone help me?
>
> Thanks in advance
>
>
>
>
> Ozge Engin
> =================================
> Computational Science & Engineering
> Koc University
>
>
-- ------------------------------------------ Giovanni Bellesia Department of Chemistry and Biochemistry University of California, Santa Barbara Santa Barbara, California 93106-9510, USA. Email: gbellesia_at_chem.ucsb.edu Phone: 805 893 2767 Web: http://www.chem.ucsb.edu/~sheagroup/ ------------------------------------------
- Next message: Andrew Huang: "Bond lengths from PDB and PSF"
- Previous message: OZGE ENGIN: "coloring according to charge of residues"
- In reply to: OZGE ENGIN: "coloring according to charge of residues"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]