VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Feb 28 2020 - 09:58:08 CST

Hi,
  You will need to obtain MSMS here:
http://mgltools.scripps.edu/packages/MSMS/

Let us know if you still need assistance.

Best regards,
  John Stone

On Fri, Feb 28, 2020 at 02:59:54PM +0100, Mandar Kulkarni wrote:
> Hi,
> I am trying to use MSMS in VMD 1.9.3 (Ubuntu 18.04). but unfortunately,
> msms command is not found.
> The error says:
> Starting MSMS with: 'msms -no_area -socketPort 1357 &'
> sh: 1: msms: not found
> Info) Waiting for MSMS server ...
> ERROR) Could not connect to MSMS server. Please check that the program
> 'msms' exists and is executable, or set the environment variable
> MSMSSERVER to point to the correct binary.
> Info) Could not compute MSMS surface
> Info) Done with MSMS surface.
> I am trying to make images for publication. Any suggestions would be
> appreciated.Â
> Thanks in advance,
> Mandar Kulkarni 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/