VMD-L Mailing List

From: Mandar Kulkarni (mandar.kulkarni.chem_at_gmail.com)
Date: Fri Feb 28 2020 - 10:02:45 CST

Hi,
Thanks for your reply.
I received the same suggestion from Carlos Simmerling and I exported path
for MSMSSERVER for binaries obtained from
http://mgltools.scripps.edu/packages/MSMS/
It's working fine now.

Thanks again,
Mandar Kulkarni

On Fri, Feb 28, 2020 at 4:58 PM John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> You will need to obtain MSMS here:
> http://mgltools.scripps.edu/packages/MSMS/
>
> Let us know if you still need assistance.
>
> Best regards,
> John Stone
>
> On Fri, Feb 28, 2020 at 02:59:54PM +0100, Mandar Kulkarni wrote:
> > Hi,
> > I am trying to use MSMS in VMD 1.9.3 (Ubuntu 18.04). but
> unfortunately,
> > msms command is not found.
> > The error says:
> > Starting MSMS with: 'msms -no_area -socketPort 1357 &'
> > sh: 1: msms: not found
> > Info) Waiting for MSMS server ...
> > ERROR) Could not connect to MSMS server.Ā Please check that the
> program
> > 'msms' exists and is executable, or set the environment variable
> > MSMSSERVER to point to the correct binary.
> > Info) Could not compute MSMS surface
> > Info) Done with MSMS surface.
> > I am trying to make images for publication. Any suggestions would be
> > appreciated.Ā
> > Thanks in advance,
> > Mandar Kulkarni
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
>