VMD-L Mailing List

From: Pawel Kedzierski (pawel.kedzierski_at_pwr.wroc.pl)
Date: Thu Nov 24 2011 - 02:52:49 CST

W dniu 23.11.2011 11:48, Philippe Bopp / temporary pisze:
> Hi all,
>
> a day's worth of googling could not solve this one:
>
> I would like to clip a representation in VdW (and/or) CPK
> without the black spots that (it seems to me) occur when
> a sphere is cut by a clip plane (see attached). In other
> words, I would like the VdW/CPK-atom to be removed as
> soon as any part of its sphere is cut by a clip plane, not only
> when the center is above/below the plane.
>
> I could also live with something like an atomselect that
> refers to the clip plane, but could not find that
> either.
You can select atoms by coordinates. For example, to select atoms with x
coordinate from 0 to 10, one would write:
x 0 to 10

Greetings,
Pawel
> A piece of tcl code (at which I am not good at all)
> would also be welcome.
>
> thanks
>
> Philippe
>
>
> -----------------
> Philippe A. Bopp
>
> philippebopp AT yahoo.com (private)
> Philippe.Bopp AT u-bordeaux1.fr (office)
> -----------------