VMD-L Mailing List

From: Ian Stokes-Rees (ijstokes_at_hkl.hms.harvard.edu)
Date: Thu Aug 12 2010 - 16:17:12 CDT

 The data I'm using is coming from a Maestro CMS file. I am comparing
the distances between two the residues of two domains. What is going
wrong with the contact map rendering in this image?

http://dl.dropbox.com/u/1561496/shared/VMD-ContactMap.png

The vertical axis labels don't correspond to the data, and when I click
on the dark spots, the residues that are highlighted in VMD don't make
sense as contact spots.

TIA,

Ian 

-- 
Ian Stokes-Rees, PhD                       W: http://hkl.hms.harvard.edu
ijstokes_at_hkl.hms.harvard.edu               T: +1 617 432-5608 x75
NEBioGrid, Harvard Medical School          C: +1 617 331-5993