VMD-L Mailing List

From: Irene Newhouse (einew_at_hotmail.com)
Date: Wed Dec 01 2010 - 00:16:32 CST

Thanks very much!
Irene
 
> Date: Tue, 30 Nov 2010 20:25:50 -0500
> From: petefred_at_ks.uiuc.edu
> To: einew_at_hotmail.com
> CC: vmd-l_at_ks.uiuc.edu
> Subject: Re: vmd-l: missing fragments in molefacture
>
> This appears to be one of the fragments that were inadvertently left out
> of the 1.8.7 release. It should work in the 1.8.8 alphas, or you can
> unzip the attached file and put it in the
> plugins/noarch/tcl/molefacture1.1/lib/fragments subdirectory of your vmd
> installation.
> Best,
> Peter
>
> On 11/29/2010 05:08 PM, Irene Newhouse wrote:
> > I just tried to use molefacture to add a phosphate group to a molecule &
> > discovered there's no fragment files for phosphate in any of my
> > libraries. I'm running VMD 1.8.7, which, according to the website is the
> > latest version. Do the fragment files exist somewhere? There's a button
> > in molefacture labeled 'phospho' but it doesn't work, due to these
> > missing files.
> >
> > Thanks!
> > Irene Newhouse