VMD-L Mailing List

From: Ajasja LjubetiÄ (ajasja.ljubetic_at_gmail.com)
Date: Wed Dec 01 2010 - 01:54:32 CST

You can use
set selection [atomselect top "protein"]
$selection get {phi psi}
to get the dihedral angles of the selected atoms and then save them to a
file.

Regards,
Ajasja

2010/12/1 Rebeca García Fandiño <regafan_at_hotmail.com>

> Hello,
> I would like to print the Phi and Psi values of a Ramachandran plot for
> each residue using VMD. I have generated the plot in VMD, but when I try to
> save the file I only have the ".ps" option. Does anybody know how can I
> print into a file the numerical values of a Ramachandran plot?.
> Thanks a lot in advance.
> Best wishes,
>
> Rebeca García
> Universidad de Santiago de Compostela
> Spain
>