VMD-L Mailing List

From: Rebeca García Fandiño (regafan_at_hotmail.com)
Date: Wed Dec 01 2010 - 09:56:45 CST

Thanks a lot to everyone. All the replies have been very useful!
Best wishes,
Rebeca.

Date: Wed, 1 Dec 2010 08:54:32 +0100
Subject: Re: vmd-l: print numerical values in a Ramachandran plot
From: ajasja.ljubetic_at_gmail.com
To: regafan_at_hotmail.com
CC: vmd-l_at_ks.uiuc.edu

You can use set selection [atomselect top "protein"]$selection get {phi psi} to get the dihedral angles of the selected atoms and then save them to a file.
Regards,
Ajasja

2010/12/1 Rebeca García Fandiño <regafan_at_hotmail.com>

Hello,
I would like to print the Phi and Psi values of a Ramachandran plot for each residue using VMD. I have generated the plot in VMD, but when I try to save the file I only have the ".ps" option. Does anybody know how can I print into a file the numerical values of a Ramachandran plot?.

Thanks a lot in advance.
Best wishes,

Rebeca García
Universidad de Santiago de Compostela
Spain