From: Aronica, Pietro (
Date: Mon Oct 29 2012 - 06:57:30 CDT

I was wondering if there was a way to set the representation a molecule from the command line. For example, given a .prmtop and a .restart file, I'd like VMD to automatically load the molecule with a specific residue in "licorice" representation and all atoms within 5 angstroms of that residue in "line" representation. I know how to do that from the graphical representation window, but can it be done from the command line?
Kind regards
Pietro Aronica