VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon May 31 2004 - 12:40:22 CDT

Ahmet,
  Did you have the correct molecule set as 'top' when you ran
your script? What do you see if you load up the 'ramaplot' plugin
and view the Ramachandran plot of the same structure?
For a selection such as yours, I'd expect a list of mostly non-zero
numbers, though if you have a tiny or otherwise unusual structure, it
may explain the problem you're having.

  John Stone
  vmd_at_ks.uiuc.edu

On Wed, May 26, 2004 at 09:52:53PM +0300, Ahmet Bakan wrote:
> Hi All,
>
>
>
> I want to retrieve phi and psi angles from this single residue along a
> trajectory. What I get is 0 value using the following lines:
>
>
>
> set ALL [atomselect top "all"]
>
> $ALL get {psi}
>
> $ALL get {phi}
>
>
>
> What may be the problem?
>
>
>
> Thanks,
>
> Ahmet
>
>
>
> ==========ABC==========
>
> Ahmet Bakan
>
> Chemistry, Junior
>
> Koc University
>
> abakan_at_ku.edu.tr
>
> ICQ #86167698
>
> http://home.ku.edu.tr/~abakan
>
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
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