VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Sep 28 2010 - 10:53:46 CDT

Hi,
  You could try using the "measure sasa" command in an analysis
script to get what you're looking for. See the VMD User's Guide for
more details.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Sep 28, 2010 at 03:24:14PM +0530, hirdesh kumar wrote:
> Hi All,
> I am interested in calculating the change in solvent accessible surface
> area during MD simulation for protein of my interest. Is there any option
> for the same in vmd? I have .parm7 and .crd files as the output files with
> me.
>
> Hirdesh 

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NIH Resource for Macromolecular Modeling and Bioinformatics
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