VMD-L Mailing List

From: Joseph Bylund (joseph.bylund_at_gmail.com)
Date: Fri Jan 06 2012 - 11:40:27 CST

I'm interested in coloring each residue in a trajectory by its RMSD to
its initial location. Similar to here:
http://www.ks.uiuc.edu/Training/Tutorials/science/aquaporin/tutorial_aqp-html/node5.html
(except rmsd instead of qres), but using frames of a trajectory instead
of aligned structures. Is there a way to do this?
thanks for any help,
-Joe