From: Bernhard Knapp (
Date: Fri Aug 01 2008 - 02:27:48 CDT

Hi vmd-people

I would like to ask you if there is some kind of modul for vmd which
colors a structure according to a given rmsd-trajectory (created by
gromacs)? For a single structure it would be easy and I would just
overwrite the beta-factors of the pdb file. But if I want to color over
a certain time range according to different rmsds over time it is
probably not so easy. Therefore I wanted to ask you if a modul like this
is existing before I start to write it on my own in TCL.

thx and greetings,

Bernhard Knapp
Unit for Medical Statistics and Informatics - Section for Biomedical 
Computersimulation and Bioinformatics
Medical University of Vienna - General Hospital
Spitalgasse 23 A-1090 WIEN / AUSTRIA
Room: BT88 - 88.03.712
Phone: +43(1) 40400-6673