VMD-L Mailing List

From: Luis Gracia (lug2002_at_med.cornell.edu)
Date: Thu Jun 08 2006 - 12:56:02 CDT

If you want to calculate the rmsd over a trajectory use the RMSDTT
plugin (VMD>Extensions>Analysis>RMSDTT) instead of the RMSD Calculator.

Luis

Tamal Banerjee said the following on 06/08/06 09:37:
> Hello VMD users,
>
> Can anyone tell me how to use the RMSD calculator in VMD 1.8.4.
> ( VMD>Extensions>Analysis>RMSD calculator)
> I first loaded the psf file then the .dcd file but then it shows a error
> I have a 125 molecule box all having the same residue number and segment
> name.
> Any help is welcome.
>
> Thanks
> --------------------------------------
> Tamal Banerjee
> Research Scholar
> Department of Chemical Engineering
> Indian Institute of Technology Kanpur
> India 208016
> Phone:+91-512-2597533(Lab)
> +91-512-2595433(Residence)
> Homepage:http://home.iitk.ac.in/~tamal
> --------------------------------------
>
>
>