VMD-L Mailing List

From: Roman Petrenko (rpetrenko_at_gmail.com)
Date: Sun Sep 21 2008 - 14:46:00 CDT

Thanks, that works!
Is there an easy way to set omega dihedrals? Side-chain angles?

On Sat, Sep 20, 2008 at 3:05 AM, John Stone <johns_at_ks.uiuc.edu> wrote:
>
> You should be able to use the atom selection "$sel set psi" and
> "$sel set phi" commands for this purpose.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Fri, Sep 19, 2008 at 10:05:24PM -0400, Roman Petrenko wrote:
>> Dear all,
>> can any share a script to set backbone dihedral angles (phi/psi) to
>> certain values and update atom coordinates?
>>
>> --
>> Roman Petrenko.
>> Physics Department
>> University of Cincinnati
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> 

-- 
Roman Petrenko.
Physics Department
University of Cincinnati