From: Barry Isralewitz (barryi_at_ks.uiuc.edu)
Date: Mon Jan 23 2006 - 15:16:42 CST

Hello Jocelyn

        Not sure what would cause this, but it sounds like a fixable bug.
I'd like to look at the file causing the problem.

        Best would be f you can make a smaller version of the dcd file that
still generates this problem, and make it available for download via
ftp or http (i.e. put on your web site), or even email it f smaller
than 5 MB.

                Cheers,

                Barry

On Jan 23, 2006, at 1:14 PM, John Stone wrote:

>
> Barry,
> Any tips on this one?
>
> John
>
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> Date: Mon, 23 Jan 2006 11:29:30 -0500
> From: Jocelyn Rodgers <jrodgers78_at_gmail.com>
> To: vmd-l_at_ks.uiuc.edu
> Subject: vmd-l: outputing secondary structure from timeline
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>
> Hello -
>
> I'm using the timeline with STRIDE to analyze secondary structure from
> two DCD trajectory files with a total of 2001 points. When I look at
> the graphical output in timeline, all residues seem classified. But
> when I output the file, a portion of the data file (all residues for
> some continuous period of time) has floating point numbers listed as
> opposed to the typical letter classifiers H,T,etc. I haven't been
> able to find documentation of this. Any idea what this means?
>
> Thanks a lot,
> Jocelyn
>
> ----- End forwarded message -----
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078

--
Barry Isralewitz   Theoretical and Computational Biophysics Group, UIUC
Beckman 3115   Office Phone: (217) 244-1612  Home Phone: (217) 337-6364
email: barryi_at_ks.uiuc.edu      http://www.ks.uiuc.edu/~barryi