From: Peng Tao (vmdhelp_at_gmail.com)
Date: Thu Aug 03 2006 - 09:47:21 CDT

Dear John,

Now I am also trying to run IED in VMD on my local Linux box. There should
not be DISPLAY problem in this way. I installed precompiled library
pylib.linux.tar.gz<http://www.ks.uiuc.edu/Research/vmd/plugins/pythonlib/vmd-1.8.4/pylib.linux.tar.gz>,
and set PYTHONPATH to that directory: (setenv PYTHONPATH
/scr/ptao/tools/vmd/prelib/lib_LINUX-rh9), and reinstalled precomplied VMD.
Unfortunately, there is still no luck here.
Any luck that I can get IED work for me without recompling VMD from source
code?

Info) VMD for LINUX, version 1.8.4b11 (February 10, 2006)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 1 CPU detected.
Info) OpenGL renderer: Mesa GLX Indirect
Info) Features: RN MTX
Info) GLSL rendering mode is NOT available.
Info) Textures: 2-D (2048x2048), Multitexture (6)
vmd > gopython /scr/ptao/tools/ied/ied-2.02/ied.py
Info) Starting Python...
Info) Text interpreter now Python
Traceback (most recent call last):
  File "VMD", line 21, in ?
  File "/scr/ptao/lib/vmd/scripts/python/Tkinter.py", line 59, in ?
    import _tkinter # If this fails your Python may not be configured for
Tk
ImportError: No module named _tkinter
Info) Text interpreter now Tcl
Traceback (most recent call last):
  File "<string>", line 2, in ?
AttributeError: 'module' object has no attribute 'tkinter'
vmd >

On 8/2/06, John Stone <johns_at_ks.uiuc.edu> wrote:
>
>
> Hi,
> You mentioned you're running VMD from a remote system. Have
> you verified that you've got the DISPLAY environment variable
> properly set before running VMD? It's possible that Python and
> TkInter aren't getting it for some reason even though VMD itself
> and the Tcl-based plugins are. I assume that the other windows
> display with no problem?
>
> Thanks,
> John Stone
> vmd_at_ks.uiuc.edu
>
>
> On Wed, Aug 02, 2006 at 10:13:04PM -0400, Peng Tao wrote:
> > Dear VMD user,
> >
> > It sounds stupid, but I still could not get IED work for me after
> reading
> > all of the posts about IED in the mailing list.
> >
> > I am trying to run IED on a remote super computer center (with Linux
> > 2.6.17.6 kernal). My local machine is Redhat9. I installed precompiled
> > library
> > pylib.linux.tar.gz<
> http://www.ks.uiuc.edu/Research/vmd/plugins/pythonlib/vmd-1.8.4/pylib.linux.tar.gz
> >
> > from
> >
> > http://www.ks.uiuc.edu/Research/vmd/plugins/pythonlib/
> > And reinstalled precompiled VMD.
> >
> > But I still could not run IED. At the end, VMD is not complaining either
> > numpy or tkinter.
> > ut I don't know what's wrong with 'Frame'. I really need to use IED. But
> I
> > don't have administrator privilige any where. Recompiling VMD from
> source
> > code is not an option for me.
> > Is there any thing I can do to get IED work for me?
> >
> > Thank you very much.
> >
> > Best regards,
> > Peng Tao
> >
> > Info) VMD for LINUX, version 1.8.4a22 (October 11, 2005)
> > Info) http://www.ks.uiuc.edu/Research/vmd/
> > Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> > Info) Please include this reference in published work using VMD:
> > Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> > Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> > Info) -------------------------------------------------------------
> > Info) Multithreading available, 4 CPUs detected.
> > Info) OpenGL renderer: Mesa GLX Indirect
> > Info) Features: RN MTX
> > Info) GLSL rendering mode is NOT available.
> > Info) Textures: 2-D (2048x2048), Multitexture (6)
> > vmd > gopython /a/osu3112/tools/IED/ied-2.02/ied.py
> > Info) Starting Python...
> > Info) Text interpreter now Python
> > Traceback (most recent call last):
> > File "VMD", line 21, in ?
> > File "/a/osu3112/bin_p4/lib/vmd/scripts/python/Tkinter.py", line 59, in
> > ?
> > import _tkinter # If this fails your Python may not be configured for
> > Tk
> > ImportError: No module named _tkinter
> > Info) Text interpreter now Tcl
> > Traceback (most recent call last):
> > File "<string>", line 2, in ?
> > AttributeError: 'module' object has no attribute 'tkinter'
> > vmd > gopython /a/osu3112/tools/IED/ied-2.02/ied.py
> > Info) Text interpreter now Python
> > Traceback (most recent call last):
> > File "VMD", line 466, in ?
> > AttributeError: 'module' object has no attribute 'Frame'
> > Info) Text interpreter now Tcl
> > vmd > gopython /a/osu3112/tools/IED/ied-2.02/ied.py
> > Info) Text interpreter now Python
> > Traceback (most recent call last):
> > File "VMD", line 466, in ?
> > AttributeError: 'module' object has no attribute 'Frame'
> >
> > Info) Text interpreter now Tcl
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>

-- 
Best regards,
Peng Tao