VMD-L Mailing List
From: Yinglong Miao (yimiao_at_indiana.edu)
Date: Thu May 15 2008 - 14:31:48 CDT
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Dear All,
I want to prepare a system with the structure solvated in a truncated
octahedron of water using VMD and simulate it with NAMD. Are there any
available VMD scripts for the truncated octahedron preparation? And can
anybody tell me how to specify the unitcell for the NAMD simulation? Any
help will be grealy appreciated.
Thanks,
Yinglong
-- Yinglong Miao Ph.D. Candidate Center for Cell and Virus Theory Chemistry Department, Indiana University 800 E Kirkwood Ave Room C203A, Bloomington, IN 47405 Tel: 1-812-856-0981
- Next message: George Madalin Giambasu: "Re: namd-l: Truncated Octahedron for VMD and NAMD simulation"
- Previous message: bo liu: "Re: namd-l: Energy plot script"
- Next in thread: George Madalin Giambasu: "Re: namd-l: Truncated Octahedron for VMD and NAMD simulation"
- Reply: George Madalin Giambasu: "Re: namd-l: Truncated Octahedron for VMD and NAMD simulation"
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