VMD-L Mailing List

From: rebeca (rebeca_at_mmb.pcb.ub.es)
Date: Tue Feb 16 2010 - 12:31:52 CST

Hi,
I have a NAMD/Charmm trajectory processed with ptraj.
 
To open it with VMD I have to load manually the psf and the trajectory
selecting Amber coordinates, and there is no problem.
 
However, when I want to load the trajectory using the text mode, I write:
 
mol load psf psf_file.psf
mol load crd trajectory.crd
 
And it does not work. I have tried to delete the first line of the file
"trajectory.crd" that is "trajectory generated by ptraj", but it does not
work either.
 
Could you please tell me how could I load this trajectory using the text
mode of vmd?
 
Thank you very much,
 
Rebeca Garcia Fandino