VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Feb 16 2010 - 13:12:14 CST

Hi,
  Can you tell us more specifically what error you're getting
when you try to load the crd file from ptraj? Without more details,
I'm afraid I can't give you any useful suggestion.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Feb 16, 2010 at 07:31:52PM +0100, rebeca wrote:
>
> Hi,
> I have a NAMD/Charmm trajectory processed with ptraj.
>
> To open it with VMD I have to load manually the psf and the trajectory
> selecting Amber coordinates, and there is no problem.
>
> However, when I want to load the trajectory using the text mode, I write:
>
> mol load psf psf_file.psf
> mol load crd trajectory.crd
>
> And it does not work. I have tried to delete the first line of the file
> "trajectory.crd" that is "trajectory generated by ptraj", but it does not
> work either.
>
> Could you please tell me how could I load this trajectory using the text
> mode of vmd?
>
> Thank you very much,
>
> Rebeca Garcia Fandino
>
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078