From: Deng, Jinxia (Nancy) (
Date: Thu May 26 2016 - 12:22:45 CDT

Hi all,

I would like to set up peptide simulations by NAMD in various single solvent environment, such as water, DMSO, etc.

Wonder whether VMD can do this. If so, can anyone share any tutorial??

If not, can anyone advise me a place to start??