From: Sasthi Charan Mandal (
Date: Sat Oct 27 2018 - 08:00:43 CDT

Dear VMD users,
      I have a problem about saving trajectory files in vmd. I have a trj
file which contains about 40000 frames including water and protein
structure and I want to save only protein part for all the 40000 frames. I
can't just load it in vmd and save it because my system hanks. The other
option is to load it in background but after loading it in background, I
don't know how to save it or what is the command for saving it. Can anyone
help to get out of this problem?
Thanks in advance.