VMD-L Mailing List

From: gaborekt_at_duq.edu
Date: Tue Jun 28 2011 - 12:34:37 CDT

Hello all,

I was wondering if someone could tell me how RDFs are normalized when
using the gofr plugin in VMD. I'm specifically interested in what bulk
density is used for normalization. I've been using VMD to calculate RDFs
and I've noticed some differences between the RDFs generated by VMD when
compared to those generated by other software. I'm not sure why that is,
so I'm looking to see if the normalization is done differently in VMD when
compared to other software programs. Thanks in advance for any help.

Best,
Tim