VMD-L Mailing List

From: Valentin Gogonea (v.gogonea_at_csuohio.edu)
Date: Thu Jul 23 2020 - 17:13:01 CDT

I am running VMD 1.9.4a43-Catalina-Rev6.

Thank you for answering so quick.

Best,

Valentin

Valentin Gogonea, Ph.D.
Professor
Department of Chemistry
Cleveland State University
2121 Euclid Avenue, SI 422
Cleveland, OH 44115
Tel: (216) 875-9717
Fax: (216) 687-9298
v.gogonea_at_csuohio.edu

> On Jul 23, 2020, at 5:47 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
>
> CAUTION: This email originated from outside of Cleveland State University! Do not click links, open attachments or reply, unless you recognize the sender's email address and know the content is safe!
>
> What version of VMD are you running?
>
> Best regards,
> John Stone
> vmd_at_ks.uiuc.edu <mailto:vmd_at_ks.uiuc.edu>
>
> On Thu, Jul 23, 2020 at 05:10:38PM -0400, Valentin Gogonea wrote:
>> Hi VMD users:
>> I tried to generate the ethanol molecule with Molefacture (as described in
>> the ffTK tutorial) and it seems that the plugin does not write out the
>> bond angles and dihedral angles in the psf file.
>> Actually these angles do not show up in the GUI widow as it displayed in
>> Figure 2 of the tutorial.
>> Can anybody suggest me what can I do to get this info?
>> Thank you.
>> Valentin
>> Valentin Gogonea, Ph.D.
>> Professor
>> Department of Chemistry
>> Cleveland State University
>> 2121 Euclid Avenue, SI 422
>> Cleveland, OH 44115
>> Tel: (216) 875-9717
>> Fax: (216) 687-9298
>> [1]v.gogonea_at_csuohio.edu <mailto:v.gogonea_at_csuohio.edu>
>>
>> References
>>
>> Visible links
>> 1. mailto:v.gogonea_at_csuohio.edu <mailto:v.gogonea_at_csuohio.edu>
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ <http://www.ks.uiuc.edu/~johns/> Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ <http://www.ks.uiuc.edu/Research/vmd/>