From: Alexei Rossokhin (alrossokhin_at_REMOVE_yahoo.com)
Date: Wed Jul 05 2023 - 09:18:37 CDT

Hi namd/vmd users,
I am modeling the dynamics of a ligand-protein complex, but the ligand is covalently bound to the protein. Can anyone advise me on how to describe a covalent bond between a protein and a ligand.
Alexey