From: Adilah Hussien (
Date: Tue Jun 19 2007 - 04:33:22 CDT

Hi there,

Does anyone know whether it is possible to use VMD to track the changes
in bond length during a simulation run?

By this I mean, for example, the length between, say, Atom 1 and Atom 2
at every x timesteps (controlled by what one inputs as the dcdfreq in
the NAMD).