From: Parisa Akhski (Parisa.Akhshi_at_chem.queensu.ca)
Date: Wed Oct 06 2010 - 17:49:29 CDT

Dear VMD users,

I have just finished the MD simulation of a DNA system. I had to restart the job three times. Now, I am looking at the trajectory of the system. The problem is that the number of the frames at two of the restarted jobs is not what it is supposed to be. In fact, many of the frames are missing. I can see that in the output file, it says:

WRITING COORDINATES TO DCD FILE AT STEP ....

for all the frames expected. But, I don't know why it doesn't show up in the dcd files that I am loading in VMD. Does anyone have any idea please?

Thanks,
Parisa