VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Tue Mar 23 2010 - 10:57:54 CDT

You may be able to run NAMD simulations with implicit solvent using the APBS
package (
http://www.poissonboltzmann.org/apbs/frequently-asked-questions/how-do-i-use-apbs-with-my-external-simulation-software
).
If you do succeed please report your experiences (I have not yet had the
time to get this working, as I need to run NAMD on a windows platform, which
is currently not supported by iAPBS).

Best regards,
Ajasja

2010/3/23 <politr_at_huji.ac.il>

> Dear all,
> I want to perform a molecular dynamics simulation with implicit solvent.
> Does anyone is familiar with such simulations and can suggest what should I
> use. Maybe I should use CHARMM
> Regina
>
>