From: L. Michel Espinoza-Fonseca (mef_at_ddt.biochem.umn.edu)
Date: Fri Mar 10 2006 - 10:02:32 CST

yep, it worked!

Thanks, Marcos

2006/3/10, Marcos Sotomayor <sotomayo_at_ks.uiuc.edu>:
>
>
> Maybe if you try "protein or ..." instead of "protein and ..."
>
> Marcos
>
>
> On Fri, 10 Mar 2006, L. Michel Espinoza-Fonseca wrote:
>
> > Hi all,
> >
> > I've been trying to visualize and save a bunch of structures from a
> > trajectory. What I'm trying to get is only the protein + a 5-A shell
> > of water around it and save it in a file. I'm using:
> >
> > set prot5A [atomselect top "protein and (same residue as (resname TIP3
> > and within 4.0
> > of (protein)))"]
> >
> > but it doesn't work. when I remove "protein and..." from the line, I
> > can visualize the shell of water, but that's all. I've tried to do it
> > from different ways, but I haven't succeed... Do you have any
> > suggestions?
> >
> > Thanks!
> > Michel
> >
>