VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jul 15 2003 - 17:08:58 CDT

Make sure they are both Active ('A' in the molecule browser) and it
should work fine..

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Jul 15, 2003 at 02:58:45PM -0700, Ioana Cozmuta wrote:
> Hi John,
>
> Now it does not want to run both trajectories, even if both systems are
> free.
>
> Ioana
>
> On Tue, 15 Jul 2003, John Stone wrote:
>
> >
> > Ioana,
> > Toggle the 'fixed' mode on one of the molecule, then use the
> > translate mouse mode ('t' key) to move the scene relative to the
> > one that's 'fixed', then toggle the fixed mode back off.
> > The 'fixed' mode is toggle by double clicking on the letter 'F'
> > for a molecule in the main window. (T=top, A=active, D=drawn, F=fixed...)
> > This is different than using the Mouse->Move->Molecule menu item because
> > it only affects the view transformations and does not affect atom coordinates.
> >
> > Thanks,
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> > On Tue, Jul 15, 2003 at 02:22:42PM -0700, Ioana Cozmuta wrote:
> > > Hi,
> > >
> > > I've loaded two pdb files and for each of them a trajectory. What I want
> > > is to visualize the two trajectories at the same time. They have the same
> > > timescale associated so I would like to see how the two copies of the
> > > system evolve in time.
> > > I am not able to do that so far without the system to overlap the two pdb
> > > files. (I've tried to shift one pdb file with respect to the other but
> > > once the trj start running they automatically overlap the two unit cells).
> > > Is there a clean way to do this?
> > >
> > > Thanks,
> > > Ioana
> > >
> > >
> > > ****************************************************************************
> > > * Ioana Cozmuta, PhD * *
> > > * NASA-AMES Research Center * "Gravitation can not be held responsible*
> > > * Mail Stop 230-3 * for people falling in love" *
> > > * Moffet Field,CA 94035 * *
> > > * phone: (650) 604-0993 * Albert Einstein*
> > > * fax: (650) 604-0350 * (1879-1955) *
> > > ****************************************************************************
> >
> > --
> > NIH Resource for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> > 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078