VMD-L Mailing List

From: Ioana Cozmuta (ioana_at_nas.nasa.gov)
Date: Tue Jul 15 2003 - 16:58:45 CDT

Hi John,

Now it does not want to run both trajectories, even if both systems are
free.

Ioana

On Tue, 15 Jul 2003, John Stone wrote:

>
> Ioana,
> Toggle the 'fixed' mode on one of the molecule, then use the
> translate mouse mode ('t' key) to move the scene relative to the
> one that's 'fixed', then toggle the fixed mode back off.
> The 'fixed' mode is toggle by double clicking on the letter 'F'
> for a molecule in the main window. (T=top, A=active, D=drawn, F=fixed...)
> This is different than using the Mouse->Move->Molecule menu item because
> it only affects the view transformations and does not affect atom coordinates.
>
> Thanks,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Tue, Jul 15, 2003 at 02:22:42PM -0700, Ioana Cozmuta wrote:
> > Hi,
> >
> > I've loaded two pdb files and for each of them a trajectory. What I want
> > is to visualize the two trajectories at the same time. They have the same
> > timescale associated so I would like to see how the two copies of the
> > system evolve in time.
> > I am not able to do that so far without the system to overlap the two pdb
> > files. (I've tried to shift one pdb file with respect to the other but
> > once the trj start running they automatically overlap the two unit cells).
> > Is there a clean way to do this?
> >
> > Thanks,
> > Ioana
> >
> >
> > ****************************************************************************
> > * Ioana Cozmuta, PhD * *
> > * NASA-AMES Research Center * "Gravitation can not be held responsible*
> > * Mail Stop 230-3 * for people falling in love" *
> > * Moffet Field,CA 94035 * *
> > * phone: (650) 604-0993 * Albert Einstein*
> > * fax: (650) 604-0350 * (1879-1955) *
> > ****************************************************************************
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>