VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Aug 06 2008 - 11:24:27 CDT

Valeria,
  I've posted the new test build on the VMD Public project on
BioCoRE. Please try it out and let us know if this solves
the problem you had been having. If you haven't downloaded test
builds before, please see this page:
  http://www.ks.uiuc.edu/Research/vmd/alpha/

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Sun, Aug 03, 2008 at 06:00:27PM -0600, Valeria Molinero wrote:
> John,
> thanks so much. I am looking forward to it.
> cheers,
> vale
>
> On Jul 31, 2008, at 12:00 PM, John Stone wrote:
>
> >
> >I should have a new test build containing Axel's patch available
> >pretty shortly. I'll let you know when it's posted.
> >
> >Cheers,
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> >On Tue, Jul 22, 2008 at 05:58:25PM -0600, Valeria Molinero wrote:
> >>Axel,
> >>
> >>where i can get the version you mention? I am using version 1.8.6 for
> >>mac intel.
> >>
> >>The bin size I use is 0.1A. In the version I have I must use a small
> >>bin because
> >>the volume used in the normalization is not the one of a sphere shell
> >>but its
> >>limiting value 4 pi r^2 binsize. Is this what you fixed?
> >>
> >>thanks for your help,
> >>vale
> >>
> >>On Jul 22, 2008, at 4:06 PM, Axel Kohlmeyer wrote:
> >>
> >>>if you download a recent alpha test version for the next VMD
> >>>release, gofr calculations should work fine.
> >>
> >>______________________________
> >>
> >>Valeria Molinero
> >>Assistant Professor of Chemistry
> >>University of Utah
> >>315 South 1400 East Rm 2020
> >>Salt Lake City, UT 84112-0850
> >>on campus: 324 INSCC
> >>(801) 585-9618; fax (801)-581-4353
> >>valeria.molinero_at_utah.edu
> >>
> >
> >--
> >NIH Resource for Macromolecular Modeling and Bioinformatics
> >Beckman Institute for Advanced Science and Technology
> >University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> >Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>
> ______________________________
>
> Valeria Molinero
> Assistant Professor of Chemistry
> University of Utah
> 315 South 1400 East Rm 2020
> Salt Lake City, UT 84112-0850
> on campus: 324 INSCC
> (801) 585-9618; fax (801)-581-4353
> valeria.molinero_at_utah.edu
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078