VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Mar 31 2005 - 13:02:42 CST

You can easily write a script that loops over all of the frames in a
trajectory writing the frames (and or selected atoms) that you want.
You can also use the GUI to save just a set of selected atoms and
a range of frames, if you have VMD 1.8.3.

  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Mar 28, 2005 at 02:12:21PM -0600, Michel Espinoza-Fonseca wrote:
> Hi all,
>
> I'm wondering if any of you have a script to write pdb snapshots from
> the dcd file without using the command lines:
>
>
>
> select snapshot-n [atomselect top protein frame n]
>
> $snapshot-n writepdb protein-snapshot-n.pdb
>
>
>
> All suggestions are welcome!
>
> Thanks!
>
>
>
> Peace,
>
> Michel
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
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