VMD-L Mailing List

From: L. Michel Espinoza-Fonseca (espin041_at_umn.edu)
Date: Wed Aug 17 2005 - 06:44:24 CDT

Hi Jerry

I think you'll find this script very useful for the calculation of the
RMSD. Go to:

http://physiology.med.cornell.edu/faculty/hweinstein/vmdplugins/rmsdtt/

Configure the script on vmd according to the instructions and that's all,
you'll be able to automatically get the RMSD.

Hope it helps
Michel

---------------------------
Hello,

Does anyone have a script that will compute the RMSD for a trajectory (dcd
+ psf files) relative to a pdb file of the same molecule?

Thanks in advance,
Jerry